Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Macaque (Macaca mulatta)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Human (Homo sapiens)61
146
282.4111.02.4
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Brown trout (Salmo trutta)4
14
273.5111.03.5
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0