Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141464
2923639430.9210638.82.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8372
21568334.92176122.31.5
Chordates (Chordata)87
182175
5874442094.05192100.03.1
Ciona sea squirts (Ciona)3
6
222.0222.01.0
Ciona intestinalis12
34
252.8111.02.8
Ciona savignyi4
25
2186.2111.06.2
Vertebrates (Vertebrata)197
68058
25022345.5219184.84.3
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)169
81901
2922446484.611193102.32.6
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Bony vertebrates (Euteleostomi)401
113803
26341283.8218076.86.3
Bony fishes (Actinopterygii)5
581
2386116.226120.410.8
Ray-finned fishes (Neopterygii)9
2412
35398268.036426.427.8
Osteoglossocephalai8
2215
11387276.935125.425.0
Teleost fishes (Clupeocephala)510
22881
239844.92546.710.7
Brown trout (Salmo trutta)4
14
273.5111.03.5
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Atlantic salmon (Salmo salar)632
3853
23856.1111.06.1
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Turbot (Scophthalmus maximus)37
10848
53390293.2111.0293.2
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)11
1279
2386116.3111.0116.3
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Zebrafish (Danio rerio)39
1187
238030.4111.030.4
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Lumpfish (Cyclopterus lumpus)3
385
2379128.3111.0128.3
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Goldfish (Carassius auratus)5
1242
75362248.4111.0248.4
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Denticle herring (Denticeps clupeoides reference strain)29
7776
26398268.1111.0268.1
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Rainbow trout (Oncorhynchus mykiss)32
7808
2390244.0111.0244.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)59
17289
21452293.0212167.56.6
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Tetrapods (Tetrapoda)52
12851
2398247.1212274.36.8
Amniotes (Amniota)277
67005
23200241.9211663.93.6
Reptiles and birds (Sauria)312
1438
23684.62123.31.4
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Indian cobra (Naja naja)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Mammals (Mammalia)23
5137
3435223.338962.43.5
Marsupials and Placental mammals (Theria)89
11675
2398131.229245.32.9
Placentals (Eutheria)11703
148097
2339712.72884.61.5
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Olive baboon (Papio anubis)2
5
232.5111.02.5
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Human (Homo sapiens)62
148
282.4111.02.4
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Marsupials (Marsupialia)55
1153
239521.0243.15.5
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7