Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Brown trout (Salmo trutta)4
14
273.5111.03.5
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Olive baboon (Papio anubis)2
5
232.5111.02.5
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Human (Homo sapiens)61
146
282.4111.02.4
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4