Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
89685
2549375979.028428.66.1
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)23
6273
21073272.72168108.91.6
Chordates (Chordata)76
130176
5671961712.8317489.83.5
Vertebrates (Vertebrata)160
50637
23540316.5218177.27.0
Jawed vertebrates (Gnathostomata)141
52638
2012205373.37186100.82.9
Bony vertebrates (Euteleostomi)261
68777
26205263.5217967.67.6
Bony fishes (Actinopterygii)3
378
2370126.023915.33.9
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Ray-finned fishes (Neopterygii)9
1445
3399160.624416.814.2
Spotted gar (Lepisosteus oculatus)7
1473
2385210.4111.0210.4
Osteoglossocephalai7
2061
9395294.463820.014.8
Teleost fishes (Clupeocephala)503
21780
239643.32366.411.8
Rainbow trout (Oncorhynchus mykiss)34
7841
2359230.6111.0230.6
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Turbot (Scophthalmus maximus)37
10782
19396291.4111.0291.4
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Zebrafish (Danio rerio)39
1585
239340.6111.040.6
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Lumpfish (Cyclopterus lumpus)3
373
2367124.3111.0124.3
Goldfish (Carassius auratus)5
1413
127384282.6111.0282.6
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Northern pike (Esox lucius reference strain)3
510
47377170.0111.0170.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Brown trout (Salmo trutta)5
396
238279.2111.079.2
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1059
2396105.9111.0105.9
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Atlantic cod (Gadus morhua)19
854
233744.9111.044.9
Huchen (Hucho hucho)1
2
222.0111.02.0
Atlantic salmon (Salmo salar)632
3892
23806.2111.06.2
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Channel bull blenny (Cottoperca gobio)3
540
2376180.0111.0180.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Denticle herring (Denticeps clupeoides reference strain)31
7232
29393233.3111.0233.3
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Lobe-finned fish (Sarcopterygii)42
9717
2772231.4210343.38.9
Tetrapods (Tetrapoda)32
6368
2395199.0211968.25.8
Tropical clawed frog (Xenopus tropicalis)7
338
224048.3111.048.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)167
33570
22556201.0210846.74.7
Mammals (Mammalia)11
1628
3359148.038754.12.7
Platypus (Ornithorhynchus anatinus)25
5797
2397231.9111.0231.9
Marsupials and Placental mammals (Theria)84
10816
2399128.828935.95.6
Marsupials (Marsupialia)55
830
237915.1243.14.1
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia6
31
2215.2222.02.6
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Placentals (Eutheria)11519
101342
217738.82884.11.3
Chinese hamster CHOK1GS (Cricetulus griseus CHOK1GS_HDv1)1
2
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Leopard (Panthera pardus)1
330
330330330.0111.0330.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Olive baboon (Papio anubis)2
5
232.5111.02.5
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Cattle (Bos taurus reference breed)11
30
262.7111.02.7
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Elephant (Loxodonta africana)6
20
263.3111.03.3
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Pika (Ochotona princeps)65
150
272.3111.02.3
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Domestic cat (Felis catus reference strain)1
3
333.0111.03.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Sperm whale (Physeter catodon)3
7
232.3111.02.3
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Guinea Pig (Cavia porcellus)1
395
395395395.0111.0395.0
White-tufted-ear marmoset (Callithrix jacchus)13
34
292.6111.02.6
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Degu (Octodon degus)1
2
222.0111.02.0
Human (Homo sapiens)61
146
282.4111.02.4
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Reptiles and birds (Sauria)310
1049
2123.42123.31.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Australian saltwater crocodile (Crocodylus porosus)1
262
262262262.0111.0262.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Coelacanth (Latimeria chalumnae)5
1101
2322220.2111.0220.2
Lamprey (Petromyzon marinus)14
456
238832.6111.032.6
Ciona sea squirts (Ciona)5
65
25113.0222.06.5
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster)78
425
2485.4111.05.4