Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Huchen (Hucho hucho)1
2
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Indian cobra (Naja naja)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Mammals (Mammalia)21
5121
3435243.938960.94.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Olive baboon (Papio anubis)2
5
232.5111.02.5
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Human (Homo sapiens)61
146
282.4111.02.4
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4