Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Elephant (Loxodonta africana)6
20
263.3111.03.3
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Human (Homo sapiens)61
146
282.4111.02.4
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Pika (Ochotona princeps)65
150
272.3111.02.3
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Indian cobra (Naja naja)2
4
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4