Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Osteoglossocephalai10
2688
11379268.835126.524.7
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Human (Homo sapiens)61
146
282.4111.02.4
Olive baboon (Papio anubis)2
5
232.5111.02.5
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Shrew (Sorex araneus)6
17
262.8111.02.8
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7