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33 pig breeds EPO-Extended

This alignment has been generated in Ensembl release 116 and is composed of 12,900 blocks (up to 986,735 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "EPO_EXTENDED" and the species_set_name "collection-pig_breeds".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Horse (Equus caballus)EquCab3.02,506,966,1352,281,529,59691.0138,317,51635,783,80593.39
Pig - Wuzhishan (Sus scrofa)minipig_v1.02,508,912,4572,303,328,33791.8132,216,99830,362,25594.24
Pig - Tibetan (Sus scrofa)Tibetan_Pig_v22,437,742,5242,249,147,12292.2633,242,14831,678,27895.30
Pig - Pietrain (Sus scrofa)Pietrain_pig_v12,438,316,2992,307,301,19094.6334,368,93633,165,03296.50
Pig - Largewhite (Sus scrofa)Large_White_v12,457,907,1032,315,889,91194.2234,666,06633,438,26296.46
Pig - Berkshire (Sus scrofa)Berkshire_pig_v12,434,706,7732,302,250,14094.5634,511,19733,261,71096.38
Pig - Hampshire (Sus scrofa)Hampshire_pig_v12,437,109,6122,310,435,02994.8034,573,09633,303,06696.33
Pig - Landrace (Sus scrofa)Landrace_pig_v12,440,981,8862,306,562,85194.4934,646,46933,384,45496.36
Pig - Duroc (Sus scrofa)Ninghe_Sus_12,458,257,3852,331,639,54894.8531,082,98330,239,09097.29
Pig - Jinhua (Sus scrofa)Jinhua_pig_v12,453,702,7382,304,364,42793.9134,359,34533,135,21696.44
Pig - Ghungroo (Sus scrofa)ICAR-NRCP-G12,550,824,3162,325,745,21091.1832,372,43331,318,80496.75
Pig (Sus scrofa)Sscrofa11.12,501,912,3882,358,285,37694.2635,448,59633,784,71795.31
Pig - Large White (GCA_044906105.1) (Sus scrofa)ASM4490610v12,620,975,7782,333,331,22389.0334,081,79432,723,87696.02
Pig - PB115 (Sus scrofa)CAU-K2,444,985,0742,317,775,83194.8035,284,27233,656,13695.39
Pig - euw1 (european wild boar) (Sus scrofa)ASM2165605v12,457,990,3172,322,258,57194.4832,847,99831,459,24095.77
Pig - Ossabaw miniature (Sus scrofa)ASM2471841v12,455,681,5632,324,720,91594.6735,510,87533,754,07995.05
Pig - NIHS-2020 (Sus scrofa)ASM1855540v12,598,860,0522,329,279,48289.6336,548,65834,309,95893.87
Pig USMARC (Sus scrofa)USMARCv1.02,755,438,0352,316,385,43084.0735,166,03433,006,57893.86
Pig - Norwegian Landrace (Sus scrofa)norwegian_landrace2,633,804,2322,332,528,41388.5633,938,25132,383,81195.42
Pig - Wuzhishan (GCA_048338725.1) (Sus scrofa)T2T_pig1.02,633,182,8042,327,625,76788.4034,675,00433,122,78295.52
Pig - Korean minipig (GCA_039654815.1) (Sus scrofa)ASM3965481v12,520,010,8262,324,251,86792.2332,966,06931,173,60994.56
Pig - Bama miniature (Sus scrofa)ASM764409v12,491,069,6752,312,329,22692.8235,806,03633,929,10494.76
Pig - Meishan (Sus scrofa)Meishan_pig_v12,467,495,7712,302,991,37793.3334,405,54733,156,59096.37
Pig - HJB (Sus scrofa)ASM4490618v12,716,729,2152,325,556,69685.6033,557,53232,319,09296.31
Pig - Juema (Sus scrofa)ASM4086911v12,721,492,3172,326,387,53385.4834,442,22532,873,56295.45
Pig - Chenghua (Sus scrofa)ASM3744751v12,714,138,2202,326,961,82285.7334,227,50232,806,46795.85
Pig - Ningxiang (Sus scrofa domesticus)ASM2056790v12,440,961,8432,323,091,14895.1735,175,30833,654,43595.68
Pig - Meishan (GCA_017957985.1) (Sus scrofa domesticus)ASM1795798v12,510,054,5662,325,709,53692.6633,516,97932,010,87795.51
Pig - Rongchang (Sus scrofa)Rongchang_pig_v12,459,027,7282,307,894,48193.8534,688,47533,514,00496.61
Pig - Bamei (Sus scrofa)Bamei_pig_v12,460,755,7412,304,243,97693.6434,436,29933,202,49196.42
Pig - Banna miniature (Sus scrofa)Banna2,656,541,0112,326,346,49887.5734,718,87833,034,51295.15
Cattle (Bos taurus)ARS-UCD2.02,770,686,1202,554,645,16392.2035,918,48434,116,58594.98
Sheep (Ovis aries)ARS-UI_Ramb_v3.02,654,063,9832,518,836,18694.9034,989,92433,543,48995.87

Block size distribution

Size range All 12,900 alignment blocks
# blocks Total size (incl. gaps)
10 bp - 100 bp
3
205.0 bp
100 bp - 1 kb
25
11.7 kb
1 kb - 10 kb
255
1.5 Mb
10 kb - 100 kb
5,520
249.8 Mb
100 kb - 1 Mb
4,222
1.6 Gb
1 Mb - 10 Mb
2,875
2.9 Gb