Cattle vs Vaquita Synteny results
The syntenic regions between Cattle (Bos taurus, ARS-UCD2.0) and Vaquita (Phocoena sinus, mPhoSin1.pri) were extracted from their pairwise alignment in Ensembl release 114. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 196 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Cattle |
Uncovered: 172,842,904 out of 2,770,686,120 |
Uncovered: 1,125,861 out of 35,918,484 |
| Vaquita |
Uncovered: 20,907,917 out of 2,371,524,154 |
Uncovered: 112,640 out of 31,056,201 |