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Cattle vs Hybrid - Bos Indicus Synteny results

The syntenic regions between Cattle (Bos taurus, ARS-UCD2.0) and Hybrid - Bos Indicus (Bos indicus x Bos taurus, UOA_Brahman_1) were extracted from their pairwise alignment in Ensembl release 114. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 89 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Cattle

Uncovered: 186,341,235 out of 2,770,686,120
Covered: 2,584,344,885 out of 2,770,686,120

Uncovered: 1,618,796 out of 35,918,484
Covered: 34,299,688 out of 35,918,484
Hybrid - Bos Indicus

Uncovered: 101,379,616 out of 2,680,953,056
Covered: 2,579,573,440 out of 2,680,953,056

Uncovered: 1,223,088 out of 37,484,807
Covered: 36,261,719 out of 37,484,807