Cattle vs Sperm whale Synteny results
The syntenic regions between Cattle (Bos taurus, ARS-UCD2.0) and Sperm whale (Physeter catodon, ASM283717v2) were extracted from their pairwise alignment in Ensembl release 114. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 445 synteny blocks
Genome coverage (bp) | Coding exon coverage (bp) | |
---|---|---|
Cattle |
Uncovered: 188,935,555 out of 2,770,686,120 |
Uncovered: 1,746,841 out of 35,918,484 |
Sperm whale |
Uncovered: 175,390,592 out of 2,512,132,974 |
Uncovered: 3,288,360 out of 30,899,790 |