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Cattle vs Sperm whale Synteny results

The syntenic regions between Cattle (Bos taurus, ARS-UCD2.0) and Sperm whale (Physeter catodon, ASM283717v2) were extracted from their pairwise alignment in Ensembl release 114. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 445 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Cattle

Uncovered: 188,935,555 out of 2,770,686,120
Covered: 2,581,750,565 out of 2,770,686,120

Uncovered: 1,746,841 out of 35,918,484
Covered: 34,171,643 out of 35,918,484

Sperm whale

Uncovered: 175,390,592 out of 2,512,132,974
Covered: 2,336,742,382 out of 2,512,132,974

Uncovered: 3,288,360 out of 30,899,790
Covered: 27,611,430 out of 30,899,790