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Mouse vs Norway rat - BN/NHsdMcwi Synteny results

The syntenic regions between Mouse (Mus musculus, GRCm39) and Norway rat - BN/NHsdMcwi (Rattus norvegicus, GRCr8) were extracted from their pairwise alignment in Ensembl release 114. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 297 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Mouse

Uncovered: 188,132,903 out of 2,728,222,451
Covered: 2,540,089,548 out of 2,728,222,451

Uncovered: 822,486 out of 36,936,991
Covered: 36,114,505 out of 36,936,991
Norway rat - BN/NHsdMcwi

Uncovered: 275,745,887 out of 2,849,597,492
Covered: 2,573,851,605 out of 2,849,597,492

Uncovered: 690,425 out of 37,775,112
Covered: 37,084,687 out of 37,775,112