Mouse vs Western wild mouse Synteny results
The syntenic regions between Mouse (Mus musculus, GRCm39) and Western wild mouse (Mus spretus, SPRET_EiJ_v3) were extracted from their pairwise alignment in Ensembl release 114. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 261 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Mouse |
Uncovered: 150,816,730 out of 2,728,222,451 |
Uncovered: 459,576 out of 36,936,991 |
| Western wild mouse |
Uncovered: 10,050,696 out of 2,546,544,085 |
Uncovered: 47,575 out of 35,765,005 |