Japanese medaka HdrR vs Large yellow croaker Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Large yellow croaker (Larimichthys crocea, L_crocea_2.0) were extracted from their pairwise alignment in Ensembl release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 416 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 80,408,102 out of 734,057,086 |
Uncovered: 4,303,715 out of 40,334,262 |
| Large yellow croaker |
Uncovered: 101,279,857 out of 657,939,657 |
Uncovered: 4,376,241 out of 42,080,541 |