Japanese medaka HdrR vs Zebra mbuna Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Zebra mbuna (Maylandia zebra, M_zebra_UMD2a) were extracted from their pairwise alignment in Ensembl release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 473 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 81,784,129 out of 734,057,086 |
Uncovered: 4,289,381 out of 40,334,262 |
| Zebra mbuna |
Uncovered: 229,472,666 out of 957,485,262 |
Uncovered: 6,573,665 out of 42,396,503 |