Pig - Wuzhishan assembly and gene annotation
Assembly
The minipig_v1.0 assembly was submitted by BGI-shenzhen and last updated on 2022-12-14. The assembly is on the scaffold level, consisting of 272163 contigs assembled into 137577 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 31939 while the scaffold N50 is 5853977.
Gene annotation
For information on this genebuild, please see the PDF document below.
In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
| Assembly | minipig_v1.0, INSDC Assembly GCA_000325925.2, Mar 2015 |
| Base Pairs | 2,508,912,457 |
| Golden Path Length | 2,508,912,457 |
| Annotation provider | Ensembl |
| Annotation method | Full genebuild |
| Genebuild started | Jan 2019 |
| Genebuild released | Sep 2019 |
| Genebuild last updated/patched | Jun 2019 |
| Database version | 116.10 |
Gene counts
| Coding genes | 19,994 |
| Non coding genes | 8,416 |
| Small non coding genes | 2,061 |
| Long non coding genes | 6,338 |
| Misc non coding genes | 17 |
| Pseudogenes | 1,441 |
| Gene transcripts | 58,447 |
Other
| Genscan gene predictions | 52,581 |