Assembly
The USMARCv1.0 assembly was submitted by USDA ARS and last updated on 2022-12-29. The assembly is on the chromosome level, consisting of 14818 contigs assembled into 14157 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 6372407 while the scaffold N50 is 131458098.
Gene annotation
Genome annotation was generated using the Ensembl vertebrate annotation pipeline.
In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
| Assembly | USMARCv1.0, INSDC Assembly GCA_002844635.1, Dec 2017 |
| Base Pairs | 2,755,438,035 |
| Golden Path Length | 2,755,438,035 |
| Annotation provider | Ensembl |
| Annotation method | Full genebuild |
| Genebuild started | Nov 2018 |
| Genebuild released | Jun 2019 |
| Genebuild last updated/patched | Mar 2020 |
| Database version | 116.1 |
Gene counts
| Coding genes | 21,535 |
| Non coding genes | 6,113 |
| Small non coding genes | 2,427 |
| Long non coding genes | 3,307 |
| Misc non coding genes | 379 |
| Pseudogenes | 674 |
| Gene transcripts | 58,692 |
Other
| Genscan gene predictions | 152,168 |
