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Pig - Jinhua (Jinhua_pig_v1)

Pig - Jinhua assembly and gene annotation

Assembly

The Jinhua_pig_v1 assembly was submitted by Novogene and last updated on 2022-09-26. The assembly is on the scaffold level, consisting of 158796 contigs assembled into 115554 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 95227 while the scaffold N50 is 1478908.

Gene annotation

For information on this genebuild, please see the PDF document below.

In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyJinhua_pig_v1, INSDC Assembly GCA_001700295.1, Aug 2016
Base Pairs2,453,702,738
Golden Path Length2,453,702,738
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedJan 2019
Genebuild releasedSep 2019
Genebuild last updated/patchedJun 2019
Database version116.1

Gene counts

Coding genes20,446
Non coding genes8,756
Small non coding genes2,067
Long non coding genes6,671
Misc non coding genes18
Pseudogenes1,430
Gene transcripts60,876

Other

Genscan gene predictions51,451