Pig - Hampshire assembly and gene annotation
Assembly
The Hampshire_pig_v1 assembly was submitted by Novogene and last updated on 2022-09-26. The assembly is on the scaffold level, consisting of 122452 contigs assembled into 82206 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 102417 while the scaffold N50 is 1550023.
Gene annotation
For information on this genebuild, please see the PDF document below.
In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
| Assembly | Hampshire_pig_v1, INSDC Assembly GCA_001700165.1, Aug 2016 |
| Base Pairs | 2,437,109,612 |
| Golden Path Length | 2,437,109,612 |
| Annotation provider | Ensembl |
| Annotation method | Full genebuild |
| Genebuild started | Jan 2019 |
| Genebuild released | Sep 2019 |
| Genebuild last updated/patched | Jun 2019 |
| Database version | 116.1 |
Gene counts
| Coding genes | 20,580 |
| Non coding genes | 8,587 |
| Small non coding genes | 2,062 |
| Long non coding genes | 6,508 |
| Misc non coding genes | 17 |
| Pseudogenes | 1,389 |
| Gene transcripts | 61,015 |
Other
| Genscan gene predictions | 49,744 |