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Dog - German Shepherd (UU_Cfam_GSD_1.0)

Dog - German Shepherd assembly and gene annotation

Assembly

The UU_Cfam_GSD_1.0 assembly was submitted by Uppsala University and last updated on 2026-03-26. The assembly is on the chromosome level, consisting of 2783 contigs assembled into 2198 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 14840767 while the scaffold N50 is 64299765.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyUU_Cfam_GSD_1.0, INSDC Assembly GCA_011100685.1, Mar 2020
Base Pairs2,481,983,352
Golden Path Length2,481,983,352
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedMar 2021
Genebuild released
Genebuild last updated/patchedMar 2021
Database version116.10

Gene counts

Coding genes21,063
Non coding genes9,659
Small non coding genes3,097
Long non coding genes6,540
Misc non coding genes22
Pseudogenes676
Gene transcripts57,308

Other

Genscan gene predictions82,097