Assembly
The Dog10K_Boxer_Tasha assembly was submitted by Dog Genome Sequencing Consortium and last updated on 2022-05-20. The assembly is on the chromosome level, consisting of 1162 contigs assembled into 147 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 27487084 while the scaffold N50 is 63738581.
Gene annotation
Genome annotation was generated using the Ensembl vertebrate annotation pipeline.
In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
| Assembly | Dog10K_Boxer_Tasha, INSDC Assembly GCA_000002285.4, Jun 2020 |
| Base Pairs | 2,312,785,471 |
| Golden Path Length | 2,312,785,471 |
| Annotation provider | Ensembl |
| Annotation method | Full genebuild |
| Genebuild started | Oct 2020 |
| Genebuild released | |
| Genebuild last updated/patched | Oct 2020 |
| Database version | 116.1 |
Gene counts
| Coding genes | 19,843 |
| Non coding genes | 9,659 |
| Small non coding genes | 3,286 |
| Long non coding genes | 6,352 |
| Misc non coding genes | 21 |
| Pseudogenes | 491 |
| Gene transcripts | 53,114 |
Other
| Genscan gene predictions | 47,489 |
| Short Variants | 50,335,636 |
| Structural variants | 104,982 |
